Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs10163167 chr15:83229395 A/G 2.23E-5 476 31.18 30.3 28.02 KM Plot
PRAD rs10164756 chr2:47167265 G/T 3.11E-6 491 30.8 32.4 36.77 KM Plot
PRAD rs10164794 chr2:178797973 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs10164920 chr2:178784543 G/A 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10165085 chr2:47167695 C/G 3.11E-6 491 30.8 32.4 36.77 KM Plot
PRAD rs10165192 chr2:178798326 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs10165196 chr2:178798345 T/A 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs10165299 chr2:178798400 T/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs10168605 chr2:178779985 C/A 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10170290 chr2:178782133 T/C 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10170607 chr2:178782433 T/C 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10170914 chr2:178785905 C/T 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10171079 chr2:178785897 G/A 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10171486 chr2:178786320 G/A 4.16E-5 493 30.8 31.93 20.48 KM Plot
PRAD rs10176133 chr2:178798169 A/T 4.13E-5 494 30.77 31.93 20.48 KM Plot